To construct pKS43

and pKS44, the 2.2-kbp SacI–BamHI-digested ermF–ermAM fragments from pKS1 were ligated to the SacI–BamHI sites of pKS41 and pKS42, respectively. pKS40, pKS43, and pKS44 were linearized and used to construct P. gingivalis mutants 83K8, 83K25, and 83K26, respectively, by Napabucasin clinical trial electroporation (Saiki & Konishi, 2007). The introduced mutations of 83K8, 83K25, and 83K26 were confirmed by determining the nucleotide sequences of the DNA regions that were PCR amplified using chromosomal DNA as templates. Porphyromonas gingivalis cells were grown to the stationary phase in BHIHM medium. Before P. gingivalis cell cultures were used in experiments, the turbidity was adjusted to an OD600 nm of 1.0 using a SmartSpec Plus spectrophotometer (Bio-Rad, Hercules, CA). Porphyromonas gingivalis culture was centrifuged at 10 000 g Cetuximab chemical structure for 5 min at 4 °C, and the supernatant was collected (the extracellular fraction). The extracellular fractions (6 mL) were ultracentrifuged at 250 000 g for 90 min at 4 °C. The supernatant was used as the high-speed supernatant (HSS) fraction, while the pellets were suspended

in 0.1 mL of 8 M urea containing 0.5% SDS and used as the high-speed pellet (HSP) fraction. For immunoblot analysis, a 6-mL portion of the extracellular fraction or the HSS fraction was concentrated to 0.1 mL on ultrafiltration membranes (10 000 molecular weight cutoff: Sartorius Stedim Biotech, Göettingen, Germany), diluted with 8 M urea (3 mL), concentrated to 0.1 mL, and subjected to sodium dodecyl sulfate-polyacrylamide gel electrophoresis Tideglusib (SDS-PAGE). The harvested cells were washed with phosphate-buffered saline (PBS: 137 mM NaCl, 2.7 mM KCl, 4.3 mM Na2HPO4, and 1.4 mM KH2PO4) and sonicated (Ultrasonic generator US-150 with tip #7; Nihonseiki, Japan) to generate the cell extract

fraction. The cell extract fractions were ultracentrifuged at 104 000 g for 30 min at 4 °C and the supernatant was collected (the cytoplasmic/periplasmic fraction). Membrane pellets were resuspended in PBS, solubilized with 2% Triton X-100 for 30 min at 4 °C, and centrifuged (104 000 g for 30 min at 4 °C). The supernatant was collected (the inner membrane fraction), while the pellets were resuspended in PBS and collected (the outer membrane fraction). Subcellular fractions that would not be used in the evaluation of the enzyme activity were prepared with the same buffers supplemented with a protease inhibitor cocktail (1%; Sigma-Aldrich, St. Louis, MO) and N-α-p-tosyl-l-lysine chloromethylketone hydrochloride (0.1 mM; Sigma-Aldrich). Rgp activity was determined in Tris-HCl (100 mM, pH 8.0)-CaCl2 (10 mM)-l-cysteine (10 mM) using 0.4 mM N-α-benzoyl-dl-Arg 4-nitroanilide (Sigma-Aldrich). Kgp activity was determined in sodium phosphate (20 mM, pH 7.5)-l-cysteine (5 mM) using 0.2 mM N-p-tosyl-Gly-Pro-Lys 4-nitroanilide (Sigma-Aldrich). DPPIV, DPP-7, and PTP-A activities were determined in 20 mM potassium phosphate (pH 7.