The AT threshold was lowered to 10 RFU and the stutter filters were set to 1% in the Genemarker panel file to detect the stutter peak heights. The proportion of stutter product relative to the main allele (percent stutter) was measured by dividing

the height of the stutter peak by the height of the associated allele peak. Fourteen runs were performed to examine run-to-run and channel-to-channel cross-contamination on the system. An alternating checkerboard pattern across the sample cartridges was used to test all lanes. The checkerboard pattern designs for the two cartridges were as follows: left cartridge – sample/blank/sample/blank and right cartridge-blank/sample/blank/sample. selleck chemicals llc Then, left cartridge – blank/sample/blank/sample and right cartridge – sample/blank/sample/blank format was used in the next run to ensure all lanes in the cartridges were tested. Fresh buccal swabs from donors were used in the sample channels for the

cross-contamination runs. A stability study was performed to examine the ability to obtain DNA profiles from buccal swabs that had been stored over a period of time. Fresh swabs from five individuals were run on the RapidHIT System alongside swabs from these individuals (n = 7 swabs/donor) that had been stored at room temperature for 14 days to 395 days. Analysis of positive control DNA 007 ALK phosphorylation (2 ng/20 μL) from four runs on four different instruments (n = 16) was performed to assess reproducibility of the system with a known quantity of DNA. Heterozygote peak height Acyl CoA dehydrogenase balance, average peak height and intracolor balance were calculated. To demonstrate that swabs can be retrieved and reprocessed on the bench, twenty-one buccal swabs were randomly collected from the cartridges after being run on the RapidHIT System with GlobalFiler Express chemistry. The swabs were re-extracted and amount of DNA quantified using the bench process as described above. The extracted DNA (one

to three μL) were then re-amplified with the GlobalFiler Express Kit on the 9700 thermal cycler and separated on the 3130xL per manufacturer’s protocol [12]. DNA profiles were analyzed in GeneMapper ID-X v1.4 software and profiles were compared to their GlobalFiler Express genotype obtained from the RapidHIT run as well as their profile in reference database. Results showed that decreasing the standard bead concentration by half resulted in lower average peak heights for both levels of cells applied to cotton swabs (Table 1). Increasing bead concentration showed the average peak height plateaus at the higher 200,000 level of cells on swabs, while average peak heights at the lower input of cells increased almost linearly with higher bead concentrations. Full profiles were obtained at all bead concentrations and cell loads.