Following the here applied approach, we will integrate alternative flux analysis software into our workflow framework, allowing automated isotopomer balancing. As data and results
from Flux-P can be flexibly combined with other services, for instance database queries or custom visualizations, extended analyses become possible that exceed the original MFA workflow. Flux-P is Inhibitors,research,lifescience,medical unique in supporting flexible changes of the analysis workflows at the user level, which allows researchers to easily adapt their workflows to the changing needs of different analysis setups. Note that a software system that realizes a MFA workflow based on 13C-FLUX2 has recently been described by [31]. The system applies an ActiveBPEL-based process management framework for the implementation of one fixed, comprehensive workflow that integrates 13C-FLUX2, Inhibitors,research,lifescience,medical the visualization software OMIX and additional, mostly interactive, functionality. Availability Flux-P is available for academic, non-commercial use and will be provided by the corresponding authors on request. Note that a FiatFlux license is required. Flux-P consists of a this website server running the underlying analysis software and requiring a particular setup, and the client-side workflows that can be run on any machine. On the server side, the software requires
Inhibitors,research,lifescience,medical a Unix-based operating system (Linux, Unix, Solaris, Mac OS X), a recent Java Runtime Environment (JRE), MATLAB R2011a or later (including the MATLAB Optimization and NetCDF Toolboxes), a recent Java Runtime Environment (JRE) and the Flux-P jETI server. On the client Inhibitors,research,lifescience,medical side, the software requires a recent JRE and the Java Application Building Center (jABC), Bio-jETI release, version 3.8.1 or later (available from [23]). The Flux-P workflows are platform-independent and have been tested on Windows 7, Ubuntu Linux and Mac
OS X. Acknowledgments B.E:E. acknowledges the support of Andreas Schmid Inhibitors,research,lifescience,medical and funding by the German Ministry of Science and Education (BMBF, Project ERA-NET SysMO, No. 0313980A) (VAPMdS) and the Ministry of Innovation, Science, Research and Technology of North Rhine-Westphalia (Bio.NRW, Technology Platform Biocatalysis, RedoxCell) Annual Review of Genetics during her PhD studies at the Chair of Chemical Biotechnology, TU Dortmund University, Germany. Supplementary Files Supplementary File 1 Supplementary File (PDF, 4337 KB) Click here for additional data file.(4.2M, pdf) Supplementary Materials Supplementary Materials Supplementary information can be accessed at http://www.mdpi.com/2218-1989/2/4/872/S1. Conflict of Interest Conflict of Interest The authors declare no conflict of interest.
In bacteria, metabolism and signaling processes are tightly coupled to allow the cell to adapt efficiently to new environmental conditions.